PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020270-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 400aa    MW: 45621.1 Da    PI: 9.7439
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020270-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612e-19171081100
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv+     l+s rl +p  f+++++g+      + l+ +sg+sW  +l    ++++ +l++GWk F k++ +++gDf+vF++dg+  f   v+v
  NNU_020270-RA  17 FFKVF--LPELSSERLKIPLAFLKHMKGQAS--GAVWLKGPSGNSWHANL--ISNPDGLFLEDGWKAFLKDHLIQVGDFLVFRYDGNLHF--SVQV 104
                    88999..8899999*********87788844..48***************..999999**************************997777..9999 PP

                    E-SS CS
             B3  97 frks 100
                    f++s
  NNU_020270-RA 105 FDRS 108
                    9985 PP

2B347.72.9e-15304397298
                    EEE-..-HHHHT....T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   2 fkvltpsdvlks....grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     k +++ +v k+    ++  +   fa+eh  +++++   ++l++ s+  W v+l   ++s+r+++++GW++Fv++  +kegD++vF+l+   + e 
  NNU_020270-RA 304 AKFMKSTYVCKKdsllCMQPIAGCFAREHlPHDENG---IILRT-SNGAWIVEL--VQHSKRHFFGSGWRKFVRDSTIKEGDVCVFELVA--KIEI 391
                    566666666666333344478888999996444333...77666.6779*****..*******************************986..6778 PP

                    EEEEE- CS
             B3  93 vvkvfr 98 
                    +v++fr
  NNU_020270-RA 392 HVHIFR 397
                    999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-2512110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-2413110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-2015106No hitNo description
PROSITE profilePS5086313.56315108IPR003340B3 DNA binding domain
SMARTSM010194.7E-1517108IPR003340B3 DNA binding domain
PfamPF023624.4E-1717107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-20295397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-20296397IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-14301397No hitNo description
SMARTSM010193.1E-4303399IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773303399IPR003340B3 DNA binding domain
PfamPF023629.4E-13303398IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAESVRVCSE TGRRPCFFKV FLPELSSERL KIPLAFLKHM KGQASGAVWL KGPSGNSWHA  60
NLISNPDGLF LEDGWKAFLK DHLIQVGDFL VFRYDGNLHF SVQVFDRSAC EKEVAFDVKS  120
NLGKDNNSFA EREEKKKTGE EKTTDVLGAS SPSPFEAAAL KRKRVDDDPP QAAQENFESK  180
NDDENAFDKR FCGRKDATRT SERKESAPLS SKRKEGGRAP RNSSRLMYLS QTNACEHEPD  240
ERLPSEKQSK PSKLGREMMK GKKWKEMGIL HRQCCFSRRF TTEKERKELF KALKSFTSGF  300
PYFAKFMKST YVCKKDSLLC MQPIAGCFAR EHLPHDENGI ILRTSNGAWI VELVQHSKRH  360
FFGSGWRKFV RDSTIKEGDV CVFELVAKIE IHVHIFRGGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277224.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-27B3 family protein